PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000191344
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 414aa    MW: 46626.4 Da    PI: 6.821
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000191344genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.6e-52251512128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                    +pGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp  +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd++v+s+ +
  MDP0000191344  25 QPGFRFHPTDEELITFYLASKVYNGSFCG-VRIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGMRTNRATGAGYWKATGKDRQVFSAsT 119
                    69************************777.45***************8888899**************************************9878 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                    g+l g+kktLvfykgrap+g+kt+Wvmheyrl
  MDP0000191344 120 GALLGMKKTLVFYKGRAPRGHKTKWVMHEYRL 151
                    889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6121174IPR003441NAC domain
PROSITE profilePS5100557.56824174IPR003441NAC domain
PfamPF023653.2E-2726151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLGIGMEEIM SELMSGEDEN GQGFQPGFRF HPTDEELITF YLASKVYNGS FCGVRIAEVD  60
LNRCEPWELP DVAKMGEREW YFFSLRDRKY PTGMRTNRAT GAGYWKATGK DRQVFSASTG  120
ALLGMKKTLV FYKGRAPRGH KTKWVMHEYR LDGHFSSYRH DCQEEWVICR INHKSGKKKS  180
PLLDHEAAAS AISNCNYLPP LLDPSSALLL XESCHGXLNP MQLQAPPPPP IHQENHDTFS  240
SFPAINAFQT HQLPSFSRSL LFKSLFDQDC NSSSSSSTIP KQCKTELANY FSRFQTPDNS  300
HNNNNSTRNN LHGLNLXVEL EKNRDHQYQP NAPYHHQHDQ YNDLLPFDYL DYSTSVLGFA  360
SAEAAEATTS TSTATAAVHA HDTSPSVAFN RAGFQTMLDL PPIKLPGESC RPYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-482617419165NO APICAL MERISTEM PROTEIN
1ut4_B2e-482617419165NO APICAL MERISTEM PROTEIN
1ut7_A2e-482617419165NO APICAL MERISTEM PROTEIN
1ut7_B2e-482617419165NO APICAL MERISTEM PROTEIN
3swm_A2e-482617422168NAC domain-containing protein 19
3swm_B2e-482617422168NAC domain-containing protein 19
3swm_C2e-482617422168NAC domain-containing protein 19
3swm_D2e-482617422168NAC domain-containing protein 19
3swp_A2e-482617422168NAC domain-containing protein 19
3swp_B2e-482617422168NAC domain-containing protein 19
3swp_C2e-482617422168NAC domain-containing protein 19
3swp_D2e-482617422168NAC domain-containing protein 19
4dul_A2e-482617419165NAC domain-containing protein 19
4dul_B2e-482617419165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981210.0KF198121.1 Malus hupehensis NAC domain protein (NAC80) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373384.10.0PREDICTED: protein BEARSKIN1
SwissprotQ9S8512e-93NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLM5WDM11e-166M5WDM1_PRUPE; Uncharacterized protein
TrEMBLA0A0P0JYN61e-166A0A0P0JYN6_PRUPE; NAC transcription factor blood
STRINGPOPTR_0002s00730.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-93NAC family protein